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Medical Data Augmentation via ChatGPT: A Case Study on Medication Identification and Medication Event Classification

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Systematic Comparative Analysis of Pre-trained Large Language Models on Contextualized Medication Event Extraction

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Identification of Lineage-specific Transcriptional Factor-defined Molecular Subtypes in Small Cell Bladder Cancer

Feng and Matoso, European Urology (2023) (in press)

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Dong and Qian, Machine Learning with Applications (2022) 100428

Calibrated bagging deep learning for image semantic segmentation: A case study on COVID-19 chest X-ray image

Nwosu et al., PLoS One. 2022; 17(11):e0276250

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Kebrom and Doust., Front. Plant Sci., 26 October 2022, https://doi.org/10.3389/fpls.2022.1023581

Performance Evaluation of Data Augmentation for Object Detection in XView Dataset

Olamofe, 2022 IDSTA 26-33, DOI:10.1109/IDSTA55301.2022.9923040

Integrating Human-in-the-loop into Swarm Learning for Decentralized Fake News Detection

Dong et. al., 2022 IDSTA 46-53, DOI:10.1109/IDSTA55301.2022.9923043

An Exosome-based Transcriptomic Signature for Noninvasive, Early Detection of Patients With Pancreatic Ductal Adenocarcinoma: A Multicenter Cohort Study

Nakamura et al., Gastroenterology. 2022, (in-press) https://doi.org/10.1053/j.gastro.2022.06.090

Semi-supervised Deep Learning for Cell Type Identification from Single-Cell Transcriptomic Data

Dong et al., IEEE/ACM Trans Comput Biol Bioinform. 2022 May 10

Personalized 3-Gene Panel for Prostate Cancer Target Therapy

Iacobas and Iacobas, Curr. Issues Mol. Biol. 2022, 44(1), 360-382; https://doi.org/10.3390/cimb44010027

Efficient Privacy Preserving Edge Computing Framework for Image Classification

Fagbohungbe et al., arXiv:2005.04563v2

Computational repurposing of therapeutic small molecules from cancer to pulmonary hypertension

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Krishna et al., PNAS Sept 7, 2021;118(36) e2103084118; https://doi.org/10.1073/pnas.2103084118

Semi-supervised Learning for COVID-19 Image Classification via ResNet

Nwosu et al., EAI Endorsed Trans. Bioeng. and Bioinfo. (accepted)

RNA sequencing of whole blood reveals early alterations in immune cells and gene expression in Parkinson’s disease

Craig et al., Nat Aging 1, 734-747 (2021)

TWEAKing the Hippocampus: The Effects of TWEAK on the Genomic Fabric of the Hippocampus in a Neuropsychiatric Lupus Mouse Model

Iacobas et al., Genes 2021 July 29;12(8):1172

Robust Face Mask Detection using Deep Learning on IoT Devices

Reza et al., IEEE ICC Workshops 2021, pp. 1-6

A Personalized Genomics Approach of the Prostate Cancer

Iacobas et al., Cells 2021 Jun 30;10(7):1644

Frataxin deficiency promotes endothelial senescence in pulmonary hypertension

Culley et al., J Clin Invest. 2021 Apr 27;136459

Retinal Genomic Fabric Remodeling after Optic Nerve Injury

Victorino et al., Genes 2021, 12(3), 403

Matrix Stiffening Induces a Pathogenic QKI-miR-7-SRSF1 Signaling Axis in Pulmonary Arterial Endothelial Cells

Woodcock et al., Am J Physiol Lung Cell Mol Physiol. 2021 Feb 10

Remodeling of Neurotransmission, Chemokine, and PI3K-AKT Signaling Genomic Fabrics in Neuropsychiatric Systemic Lupus Erythematosus

Iacobas et al., Genes 2021, 12(2):251

Transcriptomic uniqueness and commonality of the ion channels and transporters in the four heart chambers

Iacobas et al., Sci Rep. 2021, 11(1):2743

Data Driven Network Monitoring and Intrusion Detection using Machine Learning

Williams et al., SNAMS 2020, pp. 1-7.

Genomic Fabric Remodeling in Metastatic Clear Cell Renal Cell Carcinoma (ccRCC): A New Paradigm and Proposal for a Personalized Gene Therapy Approach

Iacobas et al., Cancers 2020, 12, 3678

Inference Performance Comparison of Convolutional Neural Networks on Edge Devices

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Two-Path Deep Semisupervised Learning for Timely Fake News Detection

Dong et al., IEEE Trans. Compu. Soc. Systems 7(6), pp.1386-1398

SCUBE1 Controls BMPR2-Relevant Pulmonary Endothelial Function: Implications for Diagnostic Marker Development in Pulmonary Arterial Hypertension

Sun et al., JACC Basic Transl Sci. 2020

Identification of Phytotoxic Levels of Copper and Nickel in Commercial Organic Soil Amendments Recycled from Poultry Farms and Municipal Wastes

Kebrom et al., Bull Environ Contam Toxicol 2020

Ensemble Deep Learning on Time-Series Representation of Tweets for Rumor Detection in Social Media

Kotteti et al., Appl, Sci. 2020, 10(21), 7541

A team science approach to discover novel targets for infantile spasms (IS)

The CURE Infantile Spasms Consortium, CURE Staff et al., Epilepsia Open 2020

Effective covid-19 screening using chest radiography images via deep learning

Victor et al., MCNA 2020, 126-130 (2020)

Biomarkers, Master Regulators and Genomic Fabric Remodeling in a Case of Papillary Thyroid Carcinoma

Iacobas, Genes 2020, 11, 1030

Powerful quantifiers for cancer transcriptomics

Iacobas, World Journal of Clinical Oncology 2020; 11(8):0-0

Shade signals alter the expression of circadian clock genes in newly‐formed bioenergy sorghum internodes

Kebrom et al. Plant Direct 2020; 4:e00235

Trypanosoma cruzi Promotes Transcriptomic Remodeling of the JAK/STAT Signaling and Cell Cycle Pathways in Myoblasts

Ninimura et al. Frontiers in Cellular and Infection Microbiology, 2020; 10:255

Cellular Environment Remodels the Genomic Fabrics of Functional Pathways in Astrocytes

Iacobas et al. Genes 2020; 11:520

Extracellular microRNAs in blood differentiate between ischaemic and haemorrhagic stroke subtypes

Kalani et al. J. of Extracelluar Vescicles, 2020; 9:1, 1713540

Pulmonary Hypertension Remodels the Genomic Fabrics of Major Functional Pathways

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Multiscale, multimodal analysis of tumor heterogeneity in IDH1 mutant vs wild-type diffuse gliomas

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Recurrent Neural Network Based Feature Selection for High Dimensional and Low Sample Size Micro-array Data

Chwodhury et al. Dec 2019. BigData'19 KDDBHI

Probing glioblastoma and its microenvironment using single-nucleus and single-cell sequencing

Peng et al. Nov 2019. BIBM'19 Single Cell-omics - Challenges and Opportunities

Commentary on The Gene Master Regulators GMR Approach Provides Legitimate Targets for Personalized, Time-Sensitive Cancer Gene Therapy

Iacobas, J. Cancer Immunology 2019; 1(1):31-33.

Coordinated Activity of Transcriptional Networks Responding to the Pattern of Action Potential Firing in Neurons

Iacobas et al. 26 September 2019. Genes 10(10):754.

The Gene Master Regulators (GMR) Approach Provides Legitimate Targets for Personalized, Time-Sensitive Cancer Gene Therapy

Iacobas et al. 25 July 2019. Genes 10(8):560.

Deep learning for named entity recognition on Chinese electronic medical records: Combining deep transfer learning with multitask bi-directional LSTM RNN

Dong et al. 2 May 2019. PLoS One 2;14(5):e0216046.

Leveraging Spatial Variation in Tumor Purity for Improved Somatic Variant Calling of Archival Tumor Only Samples

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Evaluation of phytotoxicity of three organic amendments to collard greens using the seed germination bioassay

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Systems Analysis of the Human Pulmonary Arterial Hypertension Lung Transcriptome

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Regeneration of Neurotransmission Transcriptome in a Model of Epileptic Encephalopathy after Antiinflammatory Treatment

Iacobas and Velisek. 2018. Neural Regen Res. 2018 Oct;13(10):1715-1718

Estrogen Protects Neurotransmission Transcriptome During Status Epilepticus

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A multitask bi-directional RNN model for named entity recognition on electronic medical records

Chowdhury et al. 2018. International Conference on Intelligent Biology and Medicine (ICIBM 2018); June 10-12, 2018; Los Angeles, CA.

ACTH and PMX53 recover synaptic transcriptome alterations in a rat model of infantile spasms

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Phenotype Classification Using Moment Features of Single-Cell Data

Sima et al. 2018. Cancer Inform.

GPU-accelerated differential dependency network analysis

Speyer et al. 2018. Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP 2018), Mar 21-23, 2018.

Gene master regulators of papillary and anaplastic thyroid cancers

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Differential Response of Glioma Stem Cells to Arsenic Trioxide Therapy Is Regulated by MNK1 and mRNA Translation

Bell et al. 2018. Mol Cancer Res. 2018 Jan;16(1):32-46.

Functional genomic fabrics are remodeled in a mouse model of Chagasic cardiomyopathy and restored following cell therapy

Iacobas et al. 2018. Microbes Infect. 2018 Mar;20(3):185-195

Closed loop control of blood glucose level with neural network predictor for diabetic patients

Bamgbose et al. 2017. IEEE HealthCom; Oct. 12-15, 2017; Dalian, China.

Sequential Therapeutic Response Modeling for Tumor Treatment Using Computational Hybrid Control Systems Approach

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Review of stochastic hybrid systems with applications in biological systems modeling and analysis

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Time-Based Switching Control of Genetic Regulatory Networks: Toward Sequential Drug Intake for Cancer Therapy

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